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On 3D graphical representation of DNA sequences

  • Chi Ru ,
  • Gao Sui-Xiang
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  • School of Mathematical Sciences of Graduate University of the Chinese Academy of Sciences, Beijing, 100049

Received date: 1900-01-01

  Revised date: 1900-01-01

  Online published: 2007-05-15

Abstract

We outline a novel 3D graphical representation of DNA sequences, which can avoid crossing and overlapping of the corresponding spatial curve. And the advantage is that we can just consider two different conditions, but three conditions in other 3D representations. As application, we construct a 2-component vector whose components are the normalized leading eigenvalues of the L/L matrices associated with DNA sequence based on the two conditions, to examine the similarities/dissimilarities among the coding sequences of different species.

Cite this article

Chi Ru , Gao Sui-Xiang . On 3D graphical representation of DNA sequences[J]. Journal of University of Chinese Academy of Sciences, 2007 , 24(3) : 280 -286 . DOI: 10.7523/j.issn.2095-6134.2007.3.002

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